Interactions of the Microbial Iron and Methane Cycles in the Tundra Ecosystem
There is great concern about changing conditions in the Arctic due to environmental transformations that are impacting tundra and its underlying permafrost. At the same time, there are major gaps in our understanding of tundra/permafrost microbiology and elemental cycling. Filling these knowledge gaps will enable a better overall understanding of the tundra, and can provide crucial information about how this globally important, but fragile ecosystem will respond to change. The particular knowledge gap this research will fill centers around iron and the bacteria that control its availability. Iron is an essential micro-nutrient for animals, plants, and microbes. It also serves as a growth substrate for certain groups of bacteria, many of which fix carbon dioxide to grow. Some of these bacteria directly compete with other groups of microbes that produce or consume methane, the atmospheric concentration of which is continuing to increase. It is particularly important to understand the dynamics of carbon dioxide and methane in the Arctic because there is a large amount of organic carbon stored in permafrost that could be converted into these two gases. The research team consists of a microbial ecologist with considerable experience in iron cycling bacteria, a mathematical modeler who will quantify the relative impacts of different microbial processes, and a tundra ecologist with extensive experience in elemental cycling in permafrost environments. This project will, for the first time, systematically characterize and quantify microbial communities responsible for iron cycling in the tundra/permafrost of Alaska's North Slope, and increase our understanding of how these microbes interact with the carbon cycle by suppressing methane production.
The basic supposition of this research is that conditions in the Arctic are beneficial to an active iron cycle because the shallow depth permafrost prevents ferrous iron-laden waters from percolating into deep aquifers (a common route for iron removal from temperate ecosystems). Furthermore, cool water temperatures slow the chemical oxidation of iron, and a short, but intense growing season provides a source of labile carbon that helps fuel iron reduction. These ideas will be tested by conducting field and laboratory studies at the Toolik Field Station on the North Slope of Alaska. Previous work has revealed there are extensive populations of iron-oxidizing and iron-reducing bacteria associated with microbial iron mats in this region, but in general, little is known about their diversity or function. This work will utilize cultivation-independent, amplicon-based community analysis and metagenomics to further characterize community diversity and function among these chemosynthetic communities. The team will measure methane production at tundra sites with high rates of iron cycling and compare these to sites that are similar in terms of hydrology and landform, but have lower rates of iron-cycling to assess the direct impact of the iron cycle on methane production and consumption. The microbiomes of these sites will also be compared using molecular analysis. In addition to these field measurements, the researchers will construct a laboratory microcosm that can be seeded with soils and microbial iron mats collected from Toolik. This will allow controlled conditions to simulate interactions of the iron and methane cycles under conditions where key parameters such as iron and oxygen concentrations can be controlled. From both field and laboratory data, a reaction-based model will be developed using a series of kinetic equations. These will form the basis for a predictive model that can estimate the suppressive effects of iron cycling on methane production. In terms of broader impacts, the work will provide unique opportunities for training undergraduate and graduate students, as well as a postdoctoral researcher, in combining field, laboratory, and modelling-based science to fill an important gap in our knowledge of the tundra ecosystem. To broaden public outreach, two artists will be engaged to create a unique art-science dialog that will broaden the interpretation of the project results and provide museum quality creative work that can be displayed in either science or art exhibits.
This collaborative project between Emerson (1754358, Bigelow) and Bowden (1754379, UVM) will explore the role a unique group of bacteria play in controlling the biogeochemical cycling of iron in an Arctic tundra ecosystem. It will investigate linkages between the iron cycle and other major biogeochemical cycles in the context of how these interactions could be affected by climate change. This three-year project will have two field seasons (2019 and now 2021) at Toolik Field Station in Alaska. In each year a field team of six will work out of Toolik Field Station. Efforts will take place within an approximate time window between 15 June and the last week of July for year 1, and from approximately 1 July to the 2nd week of August in year 2. These efforts are based on earlier monitoring with mid-June being the time when Fe-cycling communities were starting to be observed, and mid-August being the time when the first freeze-ups occur and the ecosystem is becoming less active.
Toolik Field Station worked very hard to accommodate remote sampling during the 2020 field season. While we didn't get a full field season, the staff was able to provide some samples that will allow us to keep working on an aspect of our project over the winter. Their effort allows us to keep momentum moving forward on our project. Thank you, Toolik Field Station staff!
Season Field Site
2019 Alaska - Toolik
2021 Alaska - Toolik
Publications
Berens M.J., A.B. Michaud, E. VanderJeugdt, I. Miah, F.W. Sutor, D. Emerson, W.B. Bowden, L. Kinsman-Costello, M.N. Weintraub, and E.M. Herndon, 2024: Phosphorus Interactions with Iron in Undisturbed and Disturbed Arctic Tundra Ecosystems, Environmental Science & Technology, 58(26), https://doi.org/10.1021/acs.est.3c09072
Project Outcomes
Award Number 1754358
This project was the most comprehensive analysis to date of the role of microbes that utilize iron as an energy source in the Arctic tundra play in permafrost underlain habitats on Alaska’s North Slope. These iron-cycling microbes can either capture enough energy to fix carbon dioxide and grow by oxidizing soluble ferrous iron to ferric iron, and produce rust-like precipitates of iron oxide, or, in the absence of oxygen, utilize the iron oxides to respire using organic matter or inorganic sources like hydrogen, and in this process reduce the insoluble minerals back to soluble ferrous iron. We conjecture that because the tundra regions of the North Slope are mineral soils underlain with continuous permafrost the entire hydrologic cycle is constrained to an active layer of approximately a half meter in summer. This provides an important, nearly continuous source of iron (the fourth most abundant element in Earth’s crust) that allows these iron-cycling microbes to flourish in moist wetland tundra habitats during an abbreviated growing season from mid-June to early September. Key discoveries from this work include:
• Documenting the extensiveness of these iron-rich habitats in wet-sedge meadows, stream banks, and small ponds, and characterizing the microbial communities as being unique to these habitats, and including diagnostic taxa known to either oxidize or reduce iron, but that these community structures are relatively conserved between the different habitat types.
• Developing a remote sensing algorithm that can used with drone-based, or other aerial imagery to document the presence of ‘iron mats’ associated with iron cycling microbes across the landscape. This will allow researchers to better document the extensiveness of these biologically driven iron-cycling processed across the tundra landscape using aerial imagery.
• Demonstrating that the iron oxides precipitated in these areas of active iron cycling sequester phosphorus, an important limiting nutrient in Arctic streams and rivers, thus indicating the iron cycle plays an important role in controlling phosphorus availability, and overall ecosystem function.
• Showing that anthropogenically disturbed tundra habitat can drastically alter and reduce iron cycling and that these altered sites do not show signs of biogeochemical recovery after 50 years.
• Observing that potent greenhouse gas methane is produced in these iron-rich wetland habitats, but that the extensive iron mat microbial communities are rich in microbes that utilize methane as an energy source, thereby likely reducing the overall emission of methane from tundra soils.
• Isolating a unique microbe from these iron-cycling communities, Rhodoferax, that is capable of both oxidizing and reducing iron. To date, all other iron cycling microbes belong to taxa that are capable of only oxidizing or reducing iron, but not doing both. We estimated that Rhodoferax is the most abundant microbe in the iron mats. Through sequencing its genome and studying its physiology using proteomic and transcriptomic approaches we have shown it possesses the biochemical capacity to carry out both oxidation and reduction.
In addition to these discoveries, we have taken advantage of an opportunity to collaborate with two artists, Kim and Philippe Villard, who have both resurrected and innovated a classic American woodblock art print, American Woodline Prints. Philippe traveled with the team to the Toolik Field Station where all this work was done and spent two weeks working with the scientists. The result is a series of unique art prints, the five senses and intuition, as well as the ‘Game of Iron’ an interactive card game based on both the science and artistic interpretation of the science team at work and capturing the greater meaning of the Arctic ecosystem. Works from this art will go on permanent display in a new Ocean Education and Innovation wing of Bigelow Laboratory that will be completed in early 2025.
Award Number 1754379
Previously we demonstrated that biological (primary) production in the Kuparuk River on the North Slope of Alaska (USA) is limited by exceedingly low concentrations of biologically useful phosphorus and that if we experimentally add phosphorus to streams, it profoundly alters the structure and function of these ecosystems. We assumed that the low concentration of phosphorus in these streams was caused by strong coupling of phosphorus production in tundra soils with high demand for phosphorus by tundra vegetation, so that little phosphorus was available to migrate to streams. However, it is not clear that tundra vegetation uses all the soil phosphorus available to it. We demonstrate that abundant concentrations of iron and aluminum create a substantial biogeochemical sink for phosphorus that sequesters P in forms that limit migration from the tundra to adjacent water bodies. We used two recently published pan-Arctic databases to infer that similar conditions may prevail in many other parts of the Arctic. We conclude that this biogeochemical control of phosphorus migration to headwater streams could be an important factor limiting primary production and therefore carbon processing in headwater streams in much of the Arctic, a finding that should be considered in regional and global models.
Background
The role of iron as a potential control on the mobility of phosphate (SRP) is well known in limnology, where the interaction between these two solutes in surficial sediments has been a subject of research on the vertical migration of phosphate from sediments to overlying water, for nearly 100 years. However, until recently, there has been relatively little attention to how these same interactions might influence the lateral migration of phosphate from tundra to headwater streams and rivers in the Arctic. This is important because we have previously established the low levels of phosphorus are likely to be the most important control (the limiting nutrient) on primary production in the Kuparuk River on the North Slope of Alaska. At the beginning of the Kuparuk River Long-Term experiment in the early 1980?s we hypothesized that as climate change warmed the Arctic region, thawing permafrost would release quantities of phosphorus that would exceed plant demand, and that the excess would migrate laterally to streams where it would significantly alter the food webs and trophic dynamics of Arctic stream ecosystems. Indeed, the Kuparuk River Long-Term phosphorus enrichment experiment was designed to study the effects of elevated phosphate levels in this river. Publications from this experiment have summarized results that show conclusively how an imposed release from phosphorus limitation significantly increases primary production and alters the community composition of primary producers and secondary consumers. However, more recently we published data to show that while some nutrients (specifically nitrate and ammonium) have increased as the permafrost has thawed, phosphate has not and remains at near detection limits while total dissolved phosphorus concentrations have significantly declined. It has long been known that iron is abundant in tundra soils, constrained from migrating to deeper groundwater by the barrier imposed by permafrost. In this study, we showed that geochemical sequestration of phosphate by iron oxides supplements vegetation demand for this nutrient to effectively block lateral migration of phosphate to the Kuparuk River. While future thawing of permafrost will release more phosphate, it will also release more iron and aluminum, which will continue to interact with and sequester phosphate in this watershed. We then used a recent, public database of Arctic soil properties to show that these conditions may be widespread in the pan-Arctic region. This is a fundamentally different view of the likely impacts of permafrost thaw on Arctic streams and rivers and their role in nutrient and carbon transport and transformation. If control of phosphate migration to streams in rivers by geochemical sorption in the tundra is widespread in the Arctic, then it may affect approaches to research in Arctic stream ecology, estimates of riverine transport of solutes to the Arctic Ocean, and regional to global system modeling.
Key Points
- Tundra soils in our study area have a high capacity to biogeochemically sequester and limit lateral migration of phosphorus.
- This biogeochemical sequestration likely explains low phosphorus concentrations in adjacent streams, which limits stream primary production.
- Using published data, we show that similar interactions may occur widely in the Arctic and may persist as permafrost continues to thaw.
Take home message: This project sheds light on an important interaction in the Arctic that has been overlooked and that could be important in projecting the effects of future climate warming on permafrost-dominated aquatic ecosystems.